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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015790384.1_cds_XP_016501539.1_1444
CDS Infomation

[gene=LOC107819877] [db_xref=GeneID:107819877] [protein=DEAD-box ATP-dependent RNA helicase 28-like] [protein_id=XP_016501539.1] [location=join(33262..33564,33964..34146,34224..34292,34396..34502,34978..35059,35146..35319,35638..35786,35897..35992,36905..37007,37088..37150,37344..37405,37722..37818,38606..38724,38809..38851,38999..39100,39488..39586,39680..39757,40186..40463,40738..40753)] [gbkey=CDS]
Sequence

ATGGCAGATTTTGTTTTCGAACAACCAAGTGACGAAGAAGTGGAGTACGAGGAGAATGAC
GATGAAGAAGAAGAACAAGAAGAAGCAGAAGATAACGAAGATGCCGACAACAAACCTAAG
AAGAAGACACAATCTCCATGGGATTTCTCTTCTTATTCCGAATCCGTCGCCGATGAACAC
AATCGCCGTAGCACGACGTCTATTGATTTTAAAATATCAAAAGCCCGTCAACAATTGTCT
GAACCTATAGCTAAACCAGTCGAAGAAGATTCTGATCCCGATGACTCAGAACCTCACCGC
CAAGAAGAGTATAGACCTGAGGATGGTGATGATGAAGTAGATACCAATGTTGGCGAAAAA
AAACCATTTTTTGCCTCATCAGAAGGAGTTTCATTTCAAGCCAATTCGTTTATGGAGCTC
CATATCTCAAGGCCGTTGCTTCGAGCTTGTGAAGCATTGGGTTACAGTAAGCCCACCCCG
ATTCAGGCTGCTTGCGTTCCGCTGGCCTTAACGGGCCGAGATATTTGTGGGAGTGCTATA
ACAGGATCTGGAAAGACAGCTGCCTTTGCTTTACCGACACTGGAGAGACTGTTGTACCGT
CCAAAAAATAGGCCTGCAATTAGGGTTCTTATTCTTACTCCAACAAGGGAGTTGGCTGTT
CAGGTTCATAGTATGATAGGTAAACTTGCGCAGTTTATGACAGATATCAGATGTTGTCTG
GTTGTTGGTGGTCTGTCAACCAAGGTGCAAGAACAAGCCTTGAGATCAATGCCTGATATT
GTCGTGGCAACTCCAGGACGTATGATAGATCATCTACGGAACTCCAAGTCAGTTGATTTG
GATGATCTTGCAGTATTGATTCTTGATGAGGCCGATCGACTACTGGAGCTGGGTTTCAGT
GCTGAAATTCATGAACTGGTTAGATTGTGTCCAAAGCGGAGACAGACCATGTTGTTTTCT
GCGACAATGACTGAGGAAATTGATGAGCTTATCAAGCTATCTCTGAATAAACCTTTGCGC
CTGTCAGCTGATCCATCAACGAAACGGCCAGCAACATTGACTGAAGAGGTAGTTAGAATA
CGGAGAATGCGTGAAGGAAATCAAGAAGCTGTTCTTCTTGCATTGTGCACCAAGAGCTTC
ACCTCCAAAGTGATTGTTTTCAGTGGTACAAAGCAAGCAGCACATAGGTTGAAAATTATA
TTTGGTTTACTTGGCTTCAAAGCAGCTGAGCTGCATGGAAATCTTACGCAAGCGCAACGT
CTAGATGCTTTGGAAGTTTTCAGAAAACAGGAAGTGGATTTTCTGATTGCAACTGATGTT
GCCGCTCGTGGCCTTGACATTATTGGTGTTCAAACGGTTATAAATTATGCCTGTCCACGT
GATCTTACTAGTTATGTTCATCGAGTGGGCCGCACGGCTAGAGCTGGTAGAGAAGGGTAT
GCCGTTACATTTGTCACAGACAATGATAGGTCTCTTCTAAAAGCCATTGTTAAACGAGCT
GGTTCAAGGCTGAGGAGTCGAATTGTAGCAGAGCAATCAATAGCTAAGTGGGCACAAGTA
ATTGAACAGCTGGAAGATCAAGTGGCTGCAATTATGCAAGAAGAGAGGGAAGAGATGGCA
CTAAGAAAAGCTGAGATGGAAGCAGCTAAGGCTGAGAATATGATTGCCCACAGGGATGAG
ATTTATTCACGCCCCAAAAGAACATGGTTTGTCACAGAAAAGGAGAAAAAGCTTGTCCAG
AAGGCAGCAAAGGAATCATCAGCTAAAGAAAATGGTTCCGAAAGCAAGGTGATGAGTGCC
GAACAAGCGGAAGACCTGAAGATGAAGGAGAAGAGGAAGCGAGAGCGGGAGAAAAATCTG
CCGAGGAAGAAAAGGAGGAAGCTGGAGGCTGCCCGAGAGCAATTAGAAGATGAAGATGAT
TTAGATGAAGGCAAAGGGAAAACAAAGAAAGACAAAGAGAAATCTGGGATTTCCCTAGTT
GATCTTGCTTATCGTCGTGCAAAAGCAGTCAAGGCTGTGAACAAGGCAGTTGATGCTGGC
AAGATTGTTAGAAAGACGGGGAAAAAATTGAAACCAAAAACCAGAGTATCTGAATCAAGG
AGAGATGAAATGCAGGATCTTTTTCAAAATGATATGAGTGAGAAAAAACAAAGGAAACCA
CATCATGGGGGTATGAAGAAGAAGTCTTCATTCAAGAGCAAGTCACGGTACAAGAGGAGG
TAA

Peptide Sequence

PEP ID

XP_016501539.1
PEP Infomation

PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Nicotiana tabacum]
Sequence

MADFVFEQPSDEEVEYEENDDEEEEQEEAEDNEDADNKPKKKTQSPWDFSSYSESVADEH
NRRSTTSIDFKISKARQQLSEPIAKPVEEDSDPDDSEPHRQEEYRPEDGDDEVDTNVGEK
KPFFASSEGVSFQANSFMELHISRPLLRACEALGYSKPTPIQAACVPLALTGRDICGSAI
TGSGKTAAFALPTLERLLYRPKNRPAIRVLILTPTRELAVQVHSMIGKLAQFMTDIRCCL
VVGGLSTKVQEQALRSMPDIVVATPGRMIDHLRNSKSVDLDDLAVLILDEADRLLELGFS
AEIHELVRLCPKRRQTMLFSATMTEEIDELIKLSLNKPLRLSADPSTKRPATLTEEVVRI
RRMREGNQEAVLLALCTKSFTSKVIVFSGTKQAAHRLKIIFGLLGFKAAELHGNLTQAQR
LDALEVFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY
AVTFVTDNDRSLLKAIVKRAGSRLRSRIVAEQSIAKWAQVIEQLEDQVAAIMQEEREEMA
LRKAEMEAAKAENMIAHRDEIYSRPKRTWFVTEKEKKLVQKAAKESSAKENGSESKVMSA
EQAEDLKMKEKRKREREKNLPRKKRRKLEAAREQLEDEDDLDEGKGKTKKDKEKSGISLV
DLAYRRAKAVKAVNKAVDAGKIVRKTGKKLKPKTRVSESRRDEMQDLFQNDMSEKKQRKP
HHGGMKKKSSFKSKSRYKRR

Transcript Sequence

Gene sequence data has not been registered.